Detailed information of SNP:
|
SNP ID:
sf1115937283(Gbrowse)
Chromosome: chr11 Position: 15937283 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 97.04% | 2.96% |
| All Indica | 791 | 98.99% | 1.01% |
| All Japonica | 477 | 93.92% | 6.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 315 | 91.11% | 8.89% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115937283 | C->A | INTERGENIC | None |