Detailed information of SNP:
|
SNP ID:
sf1115942725(Gbrowse)
Chromosome: chr11 Position: 15942725 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.77% | 46.23% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115942725 | G->A | LOC_Os11g28490(LOC_Os11g28490.1) | Non-Synonymous SNP |