Detailed information of SNP:
|
SNP ID:
sf1115983094(Gbrowse)
Chromosome: chr11 Position: 15983094 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.40% | 13.60% |
| All Indica | 799 | 88.99% | 11.01% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 73.13% | 26.87% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1115983094 | G->C | LOC_Os11g28530(LOC_Os11g28530.2) | INTRON |
| sf1115983094 | G->C | LOC_Os11g28530(LOC_Os11g28530.1) | INTRON |