Detailed information of SNP:
|
SNP ID:
sf1116010987(Gbrowse)
Chromosome: chr11 Position: 16010987 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.26% | 44.74% |
| All Indica | 797 | 24.22% | 75.78% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 27.01% | 72.99% |
| Indica II | 212 | 13.68% | 86.32% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116010987 | C->T | INTERGENIC | None |