Detailed information of SNP:
|
SNP ID:
sf1116029898(Gbrowse)
Chromosome: chr11 Position: 16029898 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 90.88% | 9.12% |
| All Indica | 786 | 87.15% | 12.85% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 371 | 90.03% | 9.97% |
| Indica II | 208 | 86.54% | 13.46% |
| Indica Intermediate | 207 | 82.61% | 17.39% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116029898 | C->T | INTERGENIC | None |