Detailed information of SNP:
|
SNP ID:
sf1116029961(Gbrowse)
Chromosome: chr11 Position: 16029961 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 62.96% | 37.04% |
| All Indica | 785 | 46.11% | 53.89% |
| All Japonica | 496 | 96.17% | 3.83% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 366 | 55.74% | 44.26% |
| Indica II | 211 | 30.81% | 69.19% |
| Indica Intermediate | 208 | 44.71% | 55.29% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116029961 | C->G | INTERGENIC | None |