Detailed information of SNP:
|
SNP ID:
sf1116032031(Gbrowse)
Chromosome: chr11 Position: 16032031 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 95.83% | 4.17% |
| All Indica | 778 | 94.47% | 5.53% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 358 | 92.74% | 7.26% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116032031 | C->T | INTERGENIC | None |