Detailed information of SNP:
|
SNP ID:
sf1116036739(Gbrowse)
Chromosome: chr11 Position: 16036739 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 92.87% | 7.13% |
| All Indica | 787 | 89.33% | 10.67% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 367 | 91.83% | 8.17% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116036739 | C->G | INTERGENIC | None |