Detailed information of SNP:
|
SNP ID:
sf1116043329(Gbrowse)
Chromosome: chr11 Position: 16043329 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.35% | 10.65% |
| All Indica | 798 | 85.09% | 14.91% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116043329 | C->A | INTERGENIC | None |