Detailed information of SNP:
|
SNP ID:
sf1116056016(Gbrowse)
Chromosome: chr11 Position: 16056016 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.35% | 46.65% |
| All Indica | 797 | 82.43% | 17.57% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 86.06% | 13.94% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116056016 | G->A | INTERGENIC | None |