Detailed information of SNP:
|
SNP ID:
sf1116089073(Gbrowse)
Chromosome: chr11 Position: 16089073 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1324 | 93.28% | 6.72% |
| All Indica | 716 | 89.94% | 10.06% |
| All Japonica | 489 | 97.96% | 2.04% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 343 | 90.96% | 9.04% |
| Indica II | 186 | 85.48% | 14.52% |
| Indica Intermediate | 187 | 92.51% | 7.49% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 91.11% | 8.89% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116089073 | A->G | INTERGENIC | None |