Detailed information of SNP:
|
SNP ID:
sf1116094968(Gbrowse)
Chromosome: chr11 Position: 16094968 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1315 | 94.22% | 5.78% |
| All Indica | 701 | 90.58% | 9.42% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 315 | 93.02% | 6.98% |
| Indica II | 198 | 87.88% | 12.12% |
| Indica Intermediate | 188 | 89.36% | 10.64% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116094968 | G->A | INTERGENIC | None |