Detailed information of SNP:
|
SNP ID:
sf1116096964(Gbrowse)
Chromosome: chr11 Position: 16096964 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 52.27% | 47.73% |
| All Indica | 793 | 80.71% | 19.29% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 372 | 84.68% | 15.32% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 209 | 73.21% | 26.79% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116096964 | T->C | INTERGENIC | None |