Detailed information of SNP:
|
SNP ID:
sf1116097932(Gbrowse)
Chromosome: chr11 Position: 16097932 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 71.03% | 28.97% |
| All Indica | 791 | 93.43% | 6.57% |
| All Japonica | 496 | 42.94% | 57.06% |
| Aus | 62 | 22.58% | 77.42% |
| Indica I | 369 | 95.12% | 4.88% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116097932 | T->C | INTERGENIC | None |