Detailed information of SNP:
|
SNP ID:
sf1116100770(Gbrowse)
Chromosome: chr11 Position: 16100770 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.80% | 48.20% |
| All Indica | 798 | 19.92% | 80.08% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 13.64% | 86.36% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116100770 | G->A | INTERGENIC | None |