Detailed information of SNP:
SNP ID:
sf1116106717(Gbrowse)
Chromosome: chr11 Position: 16106717 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 95.84% | 4.16% |
All Indica | 798 | 92.73% | 7.27% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 88.24% | 11.76% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 93.84% | 6.16% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1116106717 | G->A | LOC_Os11g28650(LOC_Os11g28650.1) | Synonymous |