Detailed information of SNP:
|
SNP ID:
sf1116145750(Gbrowse)
Chromosome: chr11 Position: 16145750 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1317 | 66.51% | 33.49% |
| All Indica | 765 | 96.21% | 3.79% |
| All Japonica | 438 | 12.33% | 87.67% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 359 | 97.77% | 2.23% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 197 | 92.89% | 7.11% |
| Temperate Japonica | 317 | 9.78% | 90.22% |
| Tropical Japonica | 72 | 22.22% | 77.78% |
| Japonica Intermediate | 49 | 14.29% | 85.71% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116145750 | G->A | INTERGENIC | None |