Detailed information of SNP:
|
SNP ID:
sf1116145962(Gbrowse)
Chromosome: chr11 Position: 16145962 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 91.43% | 8.57% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 459 | 79.30% | 20.70% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 322 | 90.68% | 9.32% |
| Tropical Japonica | 77 | 48.05% | 51.95% |
| Japonica Intermediate | 60 | 58.33% | 41.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116145962 | C->T | INTERGENIC | None |