Detailed information of SNP:
|
SNP ID:
sf1116148123(Gbrowse)
Chromosome: chr11 Position: 16148123 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 92.87% | 7.13% |
| All Indica | 745 | 93.83% | 6.17% |
| All Japonica | 483 | 92.34% | 7.66% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 350 | 96.00% | 4.00% |
| Indica II | 201 | 95.52% | 4.48% |
| Indica Intermediate | 194 | 88.14% | 11.86% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 83 | 77.11% | 22.89% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116148123 | T->C | LOC_Os11g28720(LOC_Os11g28720.1) | Non-Synonymous SNP |