Detailed information of SNP:
|
SNP ID:
sf1116164412(Gbrowse)
Chromosome: chr11 Position: 16164412 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 64.17% | 35.83% |
| All Indica | 797 | 96.24% | 3.76% |
| All Japonica | 496 | 9.68% | 90.32% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 334 | 6.59% | 93.41% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116164412 | A->G | INTERGENIC | None |