Detailed information of SNP:
|
SNP ID:
sf1116182575(Gbrowse)
Chromosome: chr11 Position: 16182575 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1176 | 51.53% | 48.47% |
| All Indica | 568 | 55.46% | 44.54% |
| All Japonica | 495 | 42.63% | 57.37% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 222 | 44.14% | 55.86% |
| Indica II | 187 | 65.78% | 34.22% |
| Indica Intermediate | 159 | 59.12% | 40.88% |
| Temperate Japonica | 334 | 19.76% | 80.24% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 35 | 62.86% | 37.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116182575 | T->C | INTERGENIC | None |