Detailed information of SNP:
|
SNP ID:
sf1116224859(Gbrowse)
Chromosome: chr11 Position: 16224859 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 87.34% | 12.66% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 492 | 65.24% | 34.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 83.83% | 16.17% |
| Tropical Japonica | 92 | 23.91% | 76.09% |
| Japonica Intermediate | 66 | 28.79% | 71.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116224859 | G->A | INTERGENIC | None |