Detailed information of SNP:
|
SNP ID:
sf1116227596(Gbrowse)
Chromosome: chr11 Position: 16227596 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 85.34% | 14.66% |
| All Indica | 762 | 80.45% | 19.55% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 366 | 91.26% | 8.74% |
| Indica II | 194 | 60.31% | 39.69% |
| Indica Intermediate | 202 | 80.20% | 19.80% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116227596 | A->T | LOC_Os11g28810(LOC_Os11g28810.1) | Non-Synonymous SNP |