Detailed information of SNP:
|
SNP ID:
sf1116227599(Gbrowse)
Chromosome: chr11 Position: 16227599 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 86.91% | 13.09% |
| All Indica | 746 | 78.95% | 21.05% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 349 | 89.97% | 10.03% |
| Indica II | 192 | 57.29% | 42.71% |
| Indica Intermediate | 205 | 80.49% | 19.51% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116227599 | C->A | LOC_Os11g28810(LOC_Os11g28810.1) | Non-Synonymous SNP |