Detailed information of SNP:
|
SNP ID:
sf1116247928(Gbrowse)
Chromosome: chr11 Position: 16247928 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 94.76% | 5.24% |
| All Indica | 738 | 91.73% | 8.27% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 334 | 83.53% | 16.47% |
| Indica II | 201 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 97.04% | 2.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116247928 | T->C | INTERGENIC | None |