Detailed information of SNP:
|
SNP ID:
sf1116323297(Gbrowse)
Chromosome: chr11 Position: 16323297 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 53.42% | 46.58% |
| All Indica | 771 | 84.57% | 15.43% |
| All Japonica | 490 | 2.65% | 97.35% |
| Aus | 57 | 66.67% | 33.33% |
| Indica I | 365 | 84.93% | 15.07% |
| Indica II | 206 | 85.44% | 14.56% |
| Indica Intermediate | 200 | 83.00% | 17.00% |
| Temperate Japonica | 330 | 2.42% | 97.58% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116323297 | A->G | INTERGENIC | None |