Detailed information of SNP:
|
SNP ID:
sf1116351893(Gbrowse)
Chromosome: chr11 Position: 16351893 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 51.56% | 48.44% |
| All Indica | 765 | 19.87% | 80.13% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 62 | 67.74% | 32.26% |
| Indica I | 364 | 12.09% | 87.91% |
| Indica II | 200 | 26.00% | 74.00% |
| Indica Intermediate | 201 | 27.86% | 72.14% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116351893 | G->A | INTERGENIC | None |