Detailed information of SNP:
|
SNP ID:
sf1116353328(Gbrowse)
Chromosome: chr11 Position: 16353328 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 75.28% | 24.72% |
| All Indica | 790 | 96.71% | 3.29% |
| All Japonica | 497 | 43.26% | 56.74% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 20.30% | 79.70% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116353328 | T->C | INTERGENIC | None |