Detailed information of SNP:
|
SNP ID:
sf1116355333(Gbrowse)
Chromosome: chr11 Position: 16355333 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 62.16% | 37.84% |
| All Indica | 768 | 36.07% | 63.93% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 59 | 84.75% | 15.25% |
| Indica I | 365 | 32.60% | 67.40% |
| Indica II | 201 | 40.30% | 59.70% |
| Indica Intermediate | 202 | 38.12% | 61.88% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116355333 | G->A | INTERGENIC | None |