Detailed information of SNP:
|
SNP ID:
sf1116361067(Gbrowse)
Chromosome: chr11 Position: 16361067 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1354 | 57.02% | 42.98% |
| All Indica | 744 | 27.82% | 72.18% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 58 | 68.97% | 31.03% |
| Indica I | 357 | 26.61% | 73.39% |
| Indica II | 190 | 28.95% | 71.05% |
| Indica Intermediate | 197 | 28.93% | 71.07% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116361067 | G->A | LOC_Os11g29050(LOC_Os11g29050.1) | Non-Synonymous SNP |