Detailed information of SNP:



SNP ID: sf1116367689(Gbrowse)

Chromosome: chr11

Position: 16367689
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1331 68.37% 31.63%
All Indica736 88.59% 11.41%
All Japonica496 41.13% 58.87%
Aus47 59.57% 40.43%
Indica I362 96.41% 3.59%
Indica II189 80.42% 19.58%
Indica Intermediate185 81.62% 18.38%
Temperate Japonica334 19.46% 80.54%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate68 75.00% 25.00%
Group VI/Aromatic13 7.69% 92.31%
Intermediate39 64.10% 35.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1116367689 A->G INTERGENIC None