Detailed information of SNP:
|
SNP ID:
sf1116367689(Gbrowse)
Chromosome: chr11 Position: 16367689 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 68.37% | 31.63% |
| All Indica | 736 | 88.59% | 11.41% |
| All Japonica | 496 | 41.13% | 58.87% |
| Aus | 47 | 59.57% | 40.43% |
| Indica I | 362 | 96.41% | 3.59% |
| Indica II | 189 | 80.42% | 19.58% |
| Indica Intermediate | 185 | 81.62% | 18.38% |
| Temperate Japonica | 334 | 19.46% | 80.54% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116367689 | A->G | INTERGENIC | None |