Detailed information of SNP:
|
SNP ID:
sf1116376583(Gbrowse)
Chromosome: chr11 Position: 16376583 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 95.21% | 4.79% |
| All Indica | 787 | 93.01% | 6.99% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 60 | 90.00% | 10.00% |
| Indica I | 369 | 94.85% | 5.15% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116376583 | A->T | INTERGENIC | None |