Detailed information of SNP:
|
SNP ID:
sf1116377100(Gbrowse)
Chromosome: chr11 Position: 16377100 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 90.60% | 9.40% |
| All Indica | 775 | 88.65% | 11.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 200 | 82.50% | 17.50% |
| Indica Intermediate | 203 | 83.25% | 16.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116377100 | C->T | INTERGENIC | None |