Detailed information of SNP:
|
SNP ID:
sf1116391149(Gbrowse)
Chromosome: chr11 Position: 16391149 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 70.05% | 29.95% |
| All Indica | 799 | 87.36% | 12.64% |
| All Japonica | 497 | 41.85% | 58.15% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 19.70% | 80.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116391149 | T->A | INTERGENIC | None |