Detailed information of SNP:
|
SNP ID:
sf1116441058(Gbrowse)
Chromosome: chr11 Position: 16441058 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 90.75% | 9.25% |
| All Indica | 787 | 85.51% | 14.49% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 207 | 70.05% | 29.95% |
| Indica Intermediate | 207 | 85.02% | 14.98% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116441058 | A->T | INTERGENIC | None |