Detailed information of SNP:
|
SNP ID:
sf1116490844(Gbrowse)
Chromosome: chr11 Position: 16490844 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.35% | 43.65% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116490844 | A->G | INTERGENIC | None |