Detailed information of SNP:
|
SNP ID:
sf1116508993(Gbrowse)
Chromosome: chr11 Position: 16508993 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 57.31% | 42.69% |
| All Indica | 796 | 86.93% | 13.07% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 373 | 81.23% | 18.77% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116508993 | G->A | LOC_Os11g29274(LOC_Os11g29274.1) | SNPs that introduce stop codons |