Detailed information of SNP:
|
SNP ID:
sf1116509466(Gbrowse)
Chromosome: chr11 Position: 16509466 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 95.77% | 4.23% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116509466 | T->G | INTERGENIC | None |