Detailed information of SNP:
|
SNP ID:
sf1116542083(Gbrowse)
Chromosome: chr11 Position: 16542083 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 96.26% | 3.74% |
| All Indica | 732 | 94.26% | 5.74% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 60 | 93.33% | 6.67% |
| Indica I | 323 | 91.64% | 8.36% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 202 | 96.04% | 3.96% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116542083 | C->G | LOC_Os11g29330(LOC_Os11g29330.1) | Non-Synonymous SNP |