Detailed information of SNP:
|
SNP ID:
sf1116611971(Gbrowse)
Chromosome: chr11 Position: 16611971 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.95% | 38.05% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116611971 | T->C | LOC_Os11g29410(LOC_Os11g29410.1) | INTRON |