Detailed information of SNP:
|
SNP ID:
sf1116613173(Gbrowse)
Chromosome: chr11 Position: 16613173 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 76.04% | 23.96% |
| All Indica | 799 | 65.58% | 34.42% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116613173 | G->A | INTERGENIC | None |