Detailed information of SNP:
|
SNP ID:
sf1116616216(Gbrowse)
Chromosome: chr11 Position: 16616216 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 88.77% | 11.23% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 495 | 77.37% | 22.63% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 90.15% | 9.85% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116616216 | C->T | INTERGENIC | None |