Detailed information of SNP:
|
SNP ID:
sf1116617147(Gbrowse)
Chromosome: chr11 Position: 16617147 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.78% | 10.22% |
| All Indica | 799 | 84.11% | 15.89% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116617147 | C->T | INTERGENIC | None |