Detailed information of SNP:
|
SNP ID:
sf1116632993(Gbrowse)
Chromosome: chr11 Position: 16632993 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 97.67% | 2.33% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 493 | 94.32% | 5.68% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116632993 | G->A | LOC_Os11g29470(LOC_Os11g29470.1) | INTRON |