Detailed information of SNP:
|
SNP ID:
sf1116638212(Gbrowse)
Chromosome: chr11 Position: 16638212 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 94.98% | 5.02% |
| All Indica | 795 | 92.45% | 7.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116638212 | A->G | INTERGENIC | None |