Detailed information of SNP:
|
SNP ID:
sf1116650428(Gbrowse)
Chromosome: chr11 Position: 16650428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 71.96% | 28.04% |
| All Indica | 784 | 53.19% | 46.81% |
| All Japonica | 493 | 99.39% | 0.61% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 363 | 39.39% | 60.61% |
| Indica II | 210 | 81.90% | 18.10% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116650428 | C->T | LOC_Os11g29500(LOC_Os11g29500.1) | UTR_5_PRIME |