Detailed information of SNP:
|
SNP ID:
sf1116667521(Gbrowse)
Chromosome: chr11 Position: 16667521 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 97.32% | 2.68% |
| All Indica | 767 | 97.65% | 2.35% |
| All Japonica | 468 | 99.15% | 0.85% |
| Aus | 55 | 83.64% | 16.36% |
| Indica I | 365 | 98.36% | 1.64% |
| Indica II | 196 | 95.92% | 4.08% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 325 | 99.69% | 0.31% |
| Tropical Japonica | 84 | 97.62% | 2.38% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116667521 | C->T | INTERGENIC | None |