Detailed information of SNP:
|
SNP ID:
sf1116669994(Gbrowse)
Chromosome: chr11 Position: 16669994 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 51.16% | 48.84% |
| All Indica | 786 | 69.47% | 30.53% |
| All Japonica | 476 | 16.81% | 83.19% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 372 | 79.30% | 20.70% |
| Indica II | 204 | 55.39% | 44.61% |
| Indica Intermediate | 210 | 65.71% | 34.29% |
| Temperate Japonica | 329 | 5.78% | 94.22% |
| Tropical Japonica | 84 | 44.05% | 55.95% |
| Japonica Intermediate | 63 | 38.10% | 61.90% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116669994 | G->A | LOC_Os11g29530(LOC_Os11g29530.1) | Non-Synonymous SNP |