Detailed information of SNP:
|
SNP ID:
sf1116671355(Gbrowse)
Chromosome: chr11 Position: 16671355 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1236 | 92.96% | 7.04% |
| All Indica | 748 | 92.91% | 7.09% |
| All Japonica | 384 | 96.61% | 3.39% |
| Aus | 56 | 69.64% | 30.36% |
| Indica I | 364 | 95.60% | 4.40% |
| Indica II | 180 | 85.00% | 15.00% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 301 | 98.01% | 1.99% |
| Tropical Japonica | 50 | 96.00% | 4.00% |
| Japonica Intermediate | 33 | 84.85% | 15.15% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116671355 | A->G | LOC_Os11g29530(LOC_Os11g29530.1) | INTRON |