Detailed information of SNP:
|
SNP ID:
sf1116674502(Gbrowse)
Chromosome: chr11 Position: 16674502 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 88.98% | 11.02% |
| All Indica | 785 | 89.30% | 10.70% |
| All Japonica | 484 | 89.26% | 10.74% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 203 | 94.09% | 5.91% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 328 | 97.26% | 2.74% |
| Tropical Japonica | 90 | 66.67% | 33.33% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1116674502 | G->A | LOC_Os11g29530(LOC_Os11g29530.1) | INTRON |